TRANSPATH Publications

  • Kel A, Voss N, Jauregui R, Kel-Margoulis O, Wingender E. (2006) Beyond microarrays: Find key transcription factors controlling signal transduction pathways. BMC Bioinformatics 7(Suppl. 2):S13. [Abstract]

  • Krull M, Pistor S, Voss N, Kel A, Reuter I, Kronenberg D, Michael H, Schwarzer K, Potapov A, Choi C, Kel-Margoulis O, Wingender E. (2006) TRANSPATH®: An Information Resource for Storing and Visualizing Signaling Pathways and their Pathological Aberrations. Nucleic Acids Res 34:D546-D551. [Abstract]

  • Kel-Margoulis O, Matys V, Choi C, Reuter I, Krull M, Potapov, AP, Voss N, Liebich I, Kel A, Wingender E. (2005) "Databases on Gene Regulation." Chap. 11 in Information Processing And Living Systems. Singapore: World Scientific Publishing Co. Pte. Ltd. ISBN 978-1-86094-563-2.

  • Choi C, Crass T, Kel A, Kel-Margoulis O, Krull M, Pistor S, Potapov A, Voss N, Wingender E. (2004) Consistent re-modeling of signaling pathways and its implementation in the TRANSPATH database. Genome Inf Ser 15:244-254. [Abstract]

  • Choi C, Krull M, Kel A, Kel-Margoulis O, Pistor S, Potapov A, Voss N, Wingender, E. (2004) TRANSPATH®– a high quality database focused on signal transduction. Comp Funct Genom 5:163-168.

  • Krull M, Voss N, Choi C, Pistor S, Potapov A, Wingender E. (2003) TRANSPATH®: an integrated database on signal transduction and a tool for array analysis. Nucleic Acids Res 31:97-100. [Abstract]

  • Kloos DU, Choi C, Wingender E. (2002) The TGF-beta–Smad network: introducing bioinformatic tools. Trends Genet 18:96-103. [Abstract]

  • Schacherer F, Choi C, Götze U, Krull M, Pistor S, Wingender E. (2001) The TRANSPATH signal transduction database: a knowledge base on signal transduction networks. Bioinformatics 17:1053-1057. [Abstract]

  • Potapov A, Wingender E. (2001) Modeling the architecture of regulatory networks. Proceedings of the German Conference on Bioinformatics (GCB '01), GBF Braunschweig, 6-10.

  • Wingender E, Chen X, Fricke E, Geffers R, Hehl R, Liebich I, Krull M, Matys V, Michael H, Ohnhäuser R, Prüß M, Schacherer F, Thiele S, Urbach S. (2001) The TRANSFAC system on gene expression regulation. Nucleic Acids Res 29:281-283. [Abstract]

  • Wingender E, Chen X, Hehl R, Karas H, Liebich I, Matys V, Meinhardt T, Prüß M, Reuter I, Schacherer F. (2000) TRANSFAC: an integrated system for gene expression regulation. Nucleic Acids Res 28:316-319. [Abstract]

  • Heinemeyer T, Chen X, Karas H, Kel AE, Kel OV, Liebich I, Meinhardt T, Reuter I, Schacherer F, Wingender E. (1999) Expanding the TRANSFAC database towards an expert system of regulatory molecular mechanisms. Nucleic Acids Res 27:318-22. [Abstract]

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