Species in the BKL
Major Species Covered in the BKL
The Proteome module includes, where possible, the full complement of genes for the following organisms:
Species in the BKL
| Mammalian |
Human Mouse Rat |
| Budding Yeast | Saccharomyces cerevisiae |
| Fission Yeast | Schizosaccharomyces pombe |
| Nematode | Caenorhabditis elegans |
| Fungal Pathogens |
Aspergillus flavus Aspergillus fumigatus Aspergillus niger Blastomyces dermatitidis Candida albicans Candida dubliniensis Candida glabrata Candida guilliermondi Candida krusei Candida lusitaniae Candida parapsilosis Candida pseudotropicalis Candida tropicalis Coccidioides immitis Cryptococcus neoformans Histoplasma capsulatum Pneumocystis carinii Pneumocystis jiroveci |
| Plants |
Arabidopsis thaliana Oryza sativa Zea mays Glycine max Sorghum bicolor |
Species Abbreviations for BKL Locus Reports
Abbreviations used for species names appear in the table below. Note that a number of additional species are included, as relevant, on a gene-by-gene basis even though the complete genome is not provided.
BKL Species Tags
| Abbreviation | Meaning | |
|---|---|---|
| Common Name | Genus/species | |
| Higher Order Taxons | ||
| (v.s.) | Vertebrate species | -- |
| (m.s.) | Mammalian species | -- |
| Lower Order Taxons | ||
| (a) | Thale cress | Arabidopsis thaliana |
| (aa) | American alligator | Alligator mississippiensis |
| (ac) | Egyptian spiny mouse | Acomys cahirinus |
| (AD40) | Human adenovirus type 40 | -- |
| (ae) | African elephant | Loxodonta africana |
| (ai) | -- | Amia calva |
| (an) | -- | Aspergillus nidulans |
| (ao) | Night monkey | Aotus trivirgatus |
| (ap) | Punctuate sea urchin | Arbacia punctulata |
| (as) | Starfish | Asterina pectinifera |
| Aspflavus | -- | Aspergillus flavus |
| Aspfumi | -- | Aspergillus fumigatus |
| Aspniger | - | Aspergillus niger |
| (b) | Cow | Bos taurus |
| (ba) | -- | Batrachoididae |
| (bc) | Baltic cod | Gadus callarias |
| (bf) | Japanese toad | Bufo japonicus |
| Blasto | -- | Blastomyces dermatitidis |
| (bm) | Oriental fire-bellied toad | Bombina orientalis |
| (bv) | Yellow-bellied toad | Bombina variegata |
| (c) | Chicken | Gallus gallus |
| (ca) | Dog | Canis familiaris |
| Candida, CANAL | -- | Candida albicans |
| (cb) | Chinchilla | Chinchilla brevicaudata |
| (cc) | Common carp | Cyprinus carpio |
| (cd) | Camel | Camelus dromedarius |
| Cdub | -- | Candida dubliniensis |
| (ce) | Worm | Caenorhabditis elegans |
| (cg) | Casiragua | Proechimys guairae |
| Cglab | -- | Candida glabrata |
| Cguill | -- | Candida guilliermondi |
| (ch) | Green sea turtle | Chelonia mydas caranigra |
| (cj) | Common marmoset | Callithrix jacchus |
| Ckrus | -- | Candida krusei |
| (cl) | Domestic pigeon | Columba livia |
| Clus | -- | Candida lusitaniae |
| (cm) | Elephant fish | Callorhynchus milii |
| (cr) | -- | Chlamydomonas reinhardtii |
| Cocci | -- | Coccidioides immitis |
| Cpara | -- | Candida parapsilosis |
| Cpseudo | -- | Candida pseudotropicalis |
| Crypto | -- | Cryptococcus neoformans |
| (ct) | Red-crowned mangabey | Cercocebus torquatus atys |
| Ctrop | -- | Candida tropicalis |
| (cx) | -- | Callothrix |
| (d), Dros | Fruit fly | Drosophila melanogaster |
| (dd) | Slime mold | Dictyostelium discoideum |
| (de) | Degu | Octodon degus |
| (dr) | Russell‘s viper | Daboia russelli russelli |
| (du) | Domestic duck | Anas platyrhynchos |
| (ea) | Donkey | Equus asinus |
| (EBV) | Epstein-Barr virus | -- |
| (ee) | American eel | Anguilla rostrata |
| (fc) | Cat | Felis catus |
| (fh) | Killifish | Fundulus heteroclitus |
| (fl) | European flounder | Platichthys flesus |
| (fr) | Japanese pufferfish | Fugu rubripes |
| (fw) | Finback whale | Balaenoptera physalus |
| (fy) | Fission yeast | Schizosaccharomyces pombe |
| (gl) | Golden (Syrian) hamster | Mesocricetus auratus |
| (go) | Goat | Capra hircus |
| (gr) | Gorilla | Gorilla gorilla |
| (gp) | Guinea pig | Cavia porcellus |
| (h) | Human | Homo sapiens |
| (ha) | Hamster | Cricetulus griseu |
| Histo | -- | Histoplasma capsulatum |
| (ho) | Horse | Equus caballus |
| (ie) | Indian elephant | Elephas maximus |
| (ip) | Channel catfish | Ictalurus punctatus |
| (JCV) | JC polyoma virus | -- |
| (jq) | Japanese quail | Coturnix coturnix japonica |
| (lh) | Long-tailed hamster | Cricetulus longicaudatus |
| (ls) | -- | Lepisosteus spatula |
| (m) | Mouse | Mus musculus |
| (MAIZE) | maize | Zea mays |
| (md) | Muscovy duck | Cairina moschata |
| (mf) | Cynomolgus monkey | Macaca fascicularis |
| (mg) | Turkey | Meleagris gallopavo |
| (ml) | Marbled lungfish | Protopterus aethiopicus |
| (mn) | Pig-tailed macaque | Macaca nemestrina |
| (mo) | African green monkey | Cercopithecus aethiops |
| (ms) | Shorthorn sculpin | Myoxocephalus scorpius |
| (mu) | Mongolian jird | Meriones unquiculatus |
| (mv) | Mink | Mustela vison |
| (mx) | Atlantic hagfish | Myxine glutinosa |
| (nj) | Chinese cobra | Naja atra |
| (nn) | Indian cobra | Naja naja |
| (nu) | Nutria | Myocastor coypus |
| (ob) | Olive baboon | Papio anubis |
| (oc) | Coho salmon | Oncorhynchus kisutch |
| (ok) | Chum salmon | Oncorhynchus keta |
| (ol) | Medaka | Oryzias latipes |
| (on) | -- | Oreochromis niloticus |
| (op) | Opossum | Didelphis marsupialis virginiana |
| (ou) | Orangutan | Pongo pygmaeus |
| (pc) | Yellow baboon | Papio cynocephalus |
| (pd) | Dumeril's clam worm | Platynereis dumerili |
| (pg) | Domestic pig | Sus scrofa |
| (ph) | Hamadryas baboon | Papio hamadryas |
| Pjiro | -- | Pneumocystis jiroveci |
| Pneumo | -- | Pneumocystis carinii |
| (pp) | -- | Papio |
| (po) | Porcupine | Hystrix cristata |
| (ps) | -- | Psammomys obesus |
| (pt) | Chimpanzee | Pan troglodytes |
| (r) | Rat | Rattus norvegicus |
| (rb) | Rabbit | Oryctolagus cuniculus |
| (rd) | Red deer | Cervus elaphus |
| (rf) | Rabbit fish | Chimaera monstrosa |
| (RICE) | rice | Oryza sativa |
| (RICEJC) | rice, japonica cultivar | Oryza sativa ssp. japonica |
| (RICEIC) | rice, indica cultivar | Oryza sativa ssp. indica |
| (rm) | Rhesus macaque | Macaca mulatta |
| (ro) | -- | Rodentia |
| (rr) | Laughing frog | Rana ridibunda |
| (rs) | Rattlesnake | Crotalus atrox |
| (rt) | Rainbow trout | Oncorhynchus mykiss |
| (s) | Sheep | Ovis aries |
| (sa) | Salmon | Oncorhynchus gorbuscha |
| (sb) | Beechey ground squirrel | Spermophilus beecheyi |
| (sc) | Spotted catshark | Scyliorhinus canicula |
| (si) | -- | Salmo irideus |
| (sl) | Sea lamprey | Petromyzon marinus |
| (sm) | Common squirrel monkey | Saimiri sciureus |
| (sm) | Common squirrel monkey | Saimiri sciureus |
| (SOYBN) | soybean | Glycine max |
| (sr) | Hummingbird | Selasphorus rufus |
| (ss) | Ochre sea star | Pisaster ochraceus |
| (sv) | Simian virus 40 (SV40) | -- |
| (tg) | Roughskin newt | Taricha granulosa |
| (th) | Bluefin tuna | Thunnus thynnus |
| (tm) | Marbled electric ray | Torpedo marmorata |
| (tu) | Tuna | Katsuwonus pelamis |
| (uc) | Spoonworm | Urechis caupo |
| (w) | Wheat | Triticum aestivum |
| (wh) | Sei whale | Balaenoptera borealis |
| (x) | Clawed frog | Xenopus laevis |
| (xb) | Kenyan clawed frog | Xenopus borealis |
| (xi) | -- | Xiphophorus helleri |
| (y) | Budding yeast | Saccharomyces cerevisiae |
| (z) | Zebra fish | Brachydanio rerio |
| (zd) | -- | Zaocys dhumnades |